LOC101163093 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101163093

Immunoresponsive gene 1, like. (498 aa)

Predicted Functional Partners:

acod1

0.902

ephx2

0.729

elp6

0.682

elp4

0.675

gldc

0.625

eci2

0.614

gtpbp3

0.610

trmu

0.610

amt

0.609

scly

0.604

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101163093	acod1	ENSORLP00000007735	ENSORLP00000043171	Immunoresponsive gene 1, like.	Aconitate decarboxylase 1.	0.902
LOC101163093	amt	ENSORLP00000007735	ENSORLP00000030030	Immunoresponsive gene 1, like.	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	0.609
LOC101163093	eci2	ENSORLP00000007735	ENSORLP00000004559	Immunoresponsive gene 1, like.	Enoyl-CoA delta isomerase 2.	0.614
LOC101163093	elp4	ENSORLP00000007735	ENSORLP00000012440	Immunoresponsive gene 1, like.	Elongator acetyltransferase complex subunit 4.	0.675
LOC101163093	elp6	ENSORLP00000007735	ENSORLP00000019870	Immunoresponsive gene 1, like.	Elongator acetyltransferase complex subunit 6.	0.682
LOC101163093	ephx2	ENSORLP00000007735	ENSORLP00000002021	Immunoresponsive gene 1, like.	AB hydrolase-1 domain-containing protein.	0.729
LOC101163093	gldc	ENSORLP00000007735	ENSORLP00000029139	Immunoresponsive gene 1, like.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.625
LOC101163093	gtpbp3	ENSORLP00000007735	ENSORLP00000011125	Immunoresponsive gene 1, like.	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.610
LOC101163093	scly	ENSORLP00000007735	ENSORLP00000001391	Immunoresponsive gene 1, like.	Selenocysteine lyase.	0.604
LOC101163093	trmu	ENSORLP00000007735	ENSORLP00000023721	Immunoresponsive gene 1, like.	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.	0.610
acod1	LOC101163093	ENSORLP00000043171	ENSORLP00000007735	Aconitate decarboxylase 1.	Immunoresponsive gene 1, like.	0.902
acod1	amt	ENSORLP00000043171	ENSORLP00000030030	Aconitate decarboxylase 1.	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	0.609
acod1	eci2	ENSORLP00000043171	ENSORLP00000004559	Aconitate decarboxylase 1.	Enoyl-CoA delta isomerase 2.	0.614
acod1	elp4	ENSORLP00000043171	ENSORLP00000012440	Aconitate decarboxylase 1.	Elongator acetyltransferase complex subunit 4.	0.675
acod1	elp6	ENSORLP00000043171	ENSORLP00000019870	Aconitate decarboxylase 1.	Elongator acetyltransferase complex subunit 6.	0.682
acod1	ephx2	ENSORLP00000043171	ENSORLP00000002021	Aconitate decarboxylase 1.	AB hydrolase-1 domain-containing protein.	0.729
acod1	gldc	ENSORLP00000043171	ENSORLP00000029139	Aconitate decarboxylase 1.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.625
acod1	gtpbp3	ENSORLP00000043171	ENSORLP00000011125	Aconitate decarboxylase 1.	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.610
acod1	scly	ENSORLP00000043171	ENSORLP00000001391	Aconitate decarboxylase 1.	Selenocysteine lyase.	0.604
acod1	trmu	ENSORLP00000043171	ENSORLP00000023721	Aconitate decarboxylase 1.	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.	0.610