STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101168305Endothelial cell-specific molecule 1. (181 aa)    
Predicted Functional Partners:
id3
Inhibitor of DNA binding 3.
      
 0.560
LOC101161879
Inhibitor of DNA binding 1, HLH protein.
      
 0.558
LOC101171596
Notch receptor 1a.
     
 0.516
notch1
Notch receptor 1b.
     
 0.515
LOC101174288
Cadherin 5; Cadherins are calcium-dependent cell adhesion proteins.
      
 0.511
LOC101169209
Uncharacterized protein.
    
 0.476
LOC101157257
Uncharacterized protein.
    
 0.417
LOC101157495
Zmp:0000000936.
    
 0.417
LOC105356773
Zmp:0000000936.
    
 0.417
apln
Apelin.
   
  
 0.411
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.