STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc127Coiled-coil domain containing 127a. (291 aa)    
Predicted Functional Partners:
supt7l
SPT7 like, STAGA complex gamma subunit.
   
  
 0.686
ENSORLP00000039089
Uncharacterized protein.
      
 0.638
mto1
Mitochondrial tRNA translation optimization 1.
      
 0.559
tada2b
Transcriptional adapter.
      
 0.559
cnot10
CCR4-NOT transcription complex, subunit 10.
      
 0.558
ENSORLP00000026380
Si:ch211-193l2.10.
      
 0.548
Fam104b
Uncharacterized protein.
      
 0.489
CFAP61
Cilia and flagella associated protein 61.
      
 0.487
gcat
Glycine C-acetyltransferase.
      
 0.400
c24h6orf58
Liver-enriched gene 1, tandem duplicate 2.
      
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.