STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tlcd3bTLC domain containing 3Bb. (300 aa)    
Predicted Functional Partners:
ppp4c
Serine/threonine-protein phosphatase.
    
 
 0.673
sez6l2
Seizure related 6 homolog (mouse)-like 2.
   
 
 0.605
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
    
 
 0.567
ypela
Protein yippee-like 3; May be involved in proliferation and apoptosis in myeloid precursor cells; Belongs to the yippee family.
      
 0.551
ENSORLP00000031025
Proline-rich transmembrane protein 2.
    
 
 0.540
LOC101170433
Coronin; Belongs to the WD repeat coronin family.
   
  
 0.526
LOC101169206
TAO kinase 2a.
      
 0.518
LOC101167710
Uncharacterized protein.
      
 0.517
QPRT
Nicotinate-nucleotide pyrophosphorylase [carboxylating]; Involved in the catabolism of quinolinic acid (QA). Belongs to the NadC/ModD family.
      
 0.513
LOC101174920
Potassium channel tetramerization domain containing 13.
      
 0.509
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.