STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101158751Uncharacterized protein. (228 aa)    
Predicted Functional Partners:
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.997
LOC101171784
U2 small nuclear RNA auxiliary factor 1.
  
  
 
0.901
LOC101162697
Serine and arginine rich splicing factor 1a.
   
 0.778
LOC101171767
Uncharacterized protein.
   
 0.778
LOC101163660
RRM domain-containing protein.
   
 0.768
LOC100049528
Serine and arginine rich splicing factor 2a.
   
 0.768
rnps1
RNA binding protein S1, serine-rich domain.
   
 0.742
H2N0H8_ORYLA
RRM domain-containing protein.
   
 0.740
SRSF3
Serine and arginine rich splicing factor 3b.
   
 0.740
LOC101164733
Serine and arginine rich splicing factor 9.
   
 0.738
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.