STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101158751Uncharacterized protein. (228 aa)    
Predicted Functional Partners:
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.997
zrsr2
Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2.
   
 
0.909
LOC101171784
U2 small nuclear RNA auxiliary factor 1.
  
  
 
0.901
LOC101162697
Serine and arginine rich splicing factor 1a.
   
 0.896
LOC101171767
Uncharacterized protein.
   
 0.896
LOC101163660
RRM domain-containing protein.
   
 0.880
LOC100049528
Serine and arginine rich splicing factor 2a.
   
 0.880
sf3b1
Splicing factor 3b, subunit 1.
   
 0.878
rnps1
RNA binding protein S1, serine-rich domain.
   
 0.869
LOC101164733
Serine and arginine rich splicing factor 9.
   
 0.858
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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