STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctdnep1CTD nuclear envelope phosphatase 1b. (245 aa)    
Predicted Functional Partners:
cnep1r1
CTD nuclear envelope phosphatase 1 regulatory subunit 1.
   
 0.955
H2M6T1_ORYLA
Lipin_N domain-containing protein.
    
 0.852
lpin1
Si:ch73-21k16.1.
    
 0.852
LOC101161835
Lipin 2.
    
 0.852
LOC101174419
Zgc:123305.
    
 0.852
LOC101171318
Lipin 1.
    
 0.852
acap1
ArfGAP with coiled-coil, ankyrin repeat and PH domains 1.
      
 0.813
gtf2f1
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.797
gabarap
GABA(A) receptor-associated protein b.
 
 
  
 0.714
polr2g
Polymerase (RNA) II (DNA directed) polypeptide G-like.
    
 0.694
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.