Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ctdnep1CTD nuclear envelope phosphatase 1b. (245 aa)    
Predicted Functional Partners:
cnep1r1
CTD nuclear envelope phosphatase 1 regulatory subunit 1.
   
 0.991
lpin1
Si:ch73-21k16.1.
    
 0.888
LOC101161835
Lipin 2.
    
 0.888
LOC101174419
Zgc:123305.
    
 0.888
LOC101171318
Lipin 1.
    
 0.888
H2M6T1_ORYLA
Lipin_N domain-containing protein.
    
 0.886
acap1
ArfGAP with coiled-coil, ankyrin repeat and PH domains 1.
      
 0.827
EIF5AL1
Eukaryotic translation initiation factor 5A.
   
 
 0.782
kbtbd4
Kelch repeat and BTB (POZ) domain containing 4.
   
  
 0.767
mal2
Mal, T cell differentiation protein 2 (gene/pseudogene).
      
 0.766
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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