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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101161536Odontogenic, ameloblast associated. (235 aa)    
Predicted Functional Partners:
LOC101157340
Secretory calcium-binding phosphoprotein 5.
      
 0.851
sparcl1
SPARC-like protein 1.
      
 0.799
H2LP29_ORYLA
Uncharacterized protein.
      
 0.655
fgfr1
Fibroblast growth factor receptor.
      
 0.631
LOC101157927
Secreted phosphoprotein 1.
      
 0.560
LOC101155126
Fibroblast growth factor receptor.
      
 0.528
tcf7
Transcription factor 7.
      
 0.502
fgfr3
Fibroblast growth factor receptor.
      
 0.500
lef1
Lymphoid enhancer-binding factor 1.
      
 0.484
edar
Tumor necrosis factor receptor superfamily member EDAR; Receptor for EDA (By similarity). May mediate the activation of NF-kappa-B and JNK.
      
 0.484
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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