Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALX3ALX homeobox 3. (369 aa)    
Predicted Functional Partners:
arx
Uncharacterized protein.
   
  
 0.912
LOC101165998
Dorsal root ganglia homeobox.
   
  
 0.908
OTP
Orthopedia homeobox b.
   
  
 0.870
OTP-2
Orthopedia homeobox.
   
  
 0.870
uncx
UNC homeobox.
   
  
0.813
LOC101169335
Unc4.1 homeobox (C. elegans).
   
  
 0.760
lhx3
Uncharacterized protein.
   
 0.699
lhx4
LIM homeobox 4.
   
 0.699
mrto4
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
      
 0.694
LOC101162780
LIM domain binding 1a.
    
 0.660
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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