STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgghgProtein-glucosylgalactosylhydroxylysine glucosidase. (694 aa)    
Predicted Functional Partners:
gne
Glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase.
    
 0.907
galm
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 
 0.892
treh
Trehalase.
  
 
 0.737
yipf6
Protein YIPF.
  
 0.734
alkbh3
AlkB homolog 3, alpha-ketoglutarate-dependent dioxygenase.
  
 
 0.674
slc3a1
Solute carrier family 3 member 1.
  
 
 0.674
slc3a2
Solute carrier family 3 member 2a.
  
 
 0.674
LOC101159121
Si:dkey-202g17.3.
  
 
 0.674
alkbh2
AlkB homolog 2, alpha-ketoglutarate-dependent dioxygenase.
  
 
 0.674
LOC101167257
Aamy domain-containing protein.
  
 
 0.674
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: high (82%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.