STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgghgProtein-glucosylgalactosylhydroxylysine glucosidase. (694 aa)    
Predicted Functional Partners:
gne
Glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase.
    
 0.847
treh
Trehalase.
  
 
 0.816
galm
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 
 0.815
yipf6
Protein YIPF.
  
 0.724
PKP3
Plakophilin 3.
      
 0.696
LOC101171234
Plakophilin 3b.
      
 0.696
cpne7
Copine VII.
      
 0.676
LOC101174098
Interferon induced transmembrane protein 5.
   
  
 0.609
alkbh3
AlkB homolog 3, alpha-ketoglutarate-dependent dioxygenase.
  
 
 0.604
slc3a1
Solute carrier family 3 member 1.
  
 
 0.604
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.