STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sparcl1SPARC-like protein 1. (629 aa)    
Predicted Functional Partners:
dcn
Decorin; May affect the rate of fibrils formation.
   
 
 0.760
lum
Lumican.
   
 
 0.753
LOC101157927
Secreted phosphoprotein 1.
      
 0.715
LOC101157340
Secretory calcium-binding phosphoprotein 5.
      
 0.698
serpinh1
Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b; Belongs to the serpin family.
   
 
  0.649
LOC101161536
Odontogenic, ameloblast associated.
      
 0.634
fam20a
FAM20A golgi associated secretory pathway pseudokinase.
     
 0.610
H2LP29_ORYLA
Uncharacterized protein.
      
 0.586
stab1
Stabilin 1.
     
 0.563
Stab2
Uncharacterized protein.
     
 0.563
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.