STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sparcl1SPARC-like protein 1. (629 aa)    
Predicted Functional Partners:
LOC101157340
Secretory calcium-binding phosphoprotein 5.
      
 0.821
LOC101161536
Odontogenic, ameloblast associated.
      
 0.799
lum
Lumican.
   
  
 0.721
dcn
Decorin; May affect the rate of fibrils formation.
   
  
 0.671
LOC101157927
Secreted phosphoprotein 1.
      
 0.660
fam20a
FAM20A golgi associated secretory pathway pseudokinase.
     
 0.588
H2LP29_ORYLA
Uncharacterized protein.
      
 0.567
stab1
Stabilin 1.
   
 
 0.533
Stab2
Uncharacterized protein.
   
 
 0.533
ENSORLP00000040203
Uncharacterized protein.
   
 
 0.533
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.