LOC101168772 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101168772

PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family. (405 aa)

Predicted Functional Partners:

LOC100049480

0.737

LOC101164953

0.737

pdgfrb

0.737

flt1

0.737

LOC111948643

0.737

fgfr2

0.737

LOC100049521

0.737

fgfr1

0.737

fgfr3

0.737

pdgfra

0.737

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100049480	LOC101168772	ENSORLP00000002414	ENSORLP00000007806	Kinase insert domain receptor like; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	0.737
LOC100049480	pdgfrb	ENSORLP00000002414	ENSORLP00000006025	Kinase insert domain receptor like; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Platelet-derived growth factor receptor, beta polypeptide; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.708
LOC100049521	LOC101168772	ENSORLP00000017514	ENSORLP00000007806	Fibroblast growth factor receptor 4.	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	0.737
LOC101164953	LOC101168772	ENSORLP00000005520	ENSORLP00000007806	Mast/stem cell growth factor receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	0.737
LOC101168772	LOC100049480	ENSORLP00000007806	ENSORLP00000002414	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	Kinase insert domain receptor like; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.737
LOC101168772	LOC100049521	ENSORLP00000007806	ENSORLP00000017514	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	Fibroblast growth factor receptor 4.	0.737
LOC101168772	LOC101164953	ENSORLP00000007806	ENSORLP00000005520	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	Mast/stem cell growth factor receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.737
LOC101168772	LOC111948643	ENSORLP00000007806	ENSORLP00000016040	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.737
LOC101168772	fgfr1	ENSORLP00000007806	ENSORLP00000017825	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	Fibroblast growth factor receptor.	0.737
LOC101168772	fgfr2	ENSORLP00000007806	ENSORLP00000016637	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	Fibroblast growth factor receptor.	0.737
LOC101168772	fgfr3	ENSORLP00000007806	ENSORLP00000022507	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	Fibroblast growth factor receptor.	0.737
LOC101168772	flt1	ENSORLP00000007806	ENSORLP00000010960	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.737
LOC101168772	pdgfra	ENSORLP00000007806	ENSORLP00000024620	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	Platelet-derived growth factor receptor, alpha polypeptide; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.737
LOC101168772	pdgfrb	ENSORLP00000007806	ENSORLP00000006025	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	Platelet-derived growth factor receptor, beta polypeptide; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.737
LOC111948643	LOC101168772	ENSORLP00000016040	ENSORLP00000007806	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	0.737
fgfr1	LOC101168772	ENSORLP00000017825	ENSORLP00000007806	Fibroblast growth factor receptor.	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	0.737
fgfr2	LOC101168772	ENSORLP00000016637	ENSORLP00000007806	Fibroblast growth factor receptor.	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	0.737
fgfr3	LOC101168772	ENSORLP00000022507	ENSORLP00000007806	Fibroblast growth factor receptor.	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	0.737
flt1	LOC101168772	ENSORLP00000010960	ENSORLP00000007806	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	0.737
flt1	pdgfrb	ENSORLP00000010960	ENSORLP00000006025	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Platelet-derived growth factor receptor, beta polypeptide; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.708