LOC101164071 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101164071

Zgc:66447. (615 aa)

Predicted Functional Partners:

mnd1

0.841

clvs2

0.784

sec63

0.723

rnf6

0.712

xbp1

0.693

LOC101171386

0.691

mkln1

0.686

LOC101166531

0.682

LOC101168616

0.681

atp8a2

0.677

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101164071	LOC101166531	ENSORLP00000007830	ENSORLP00000002898	Zgc:66447.	SH3 and PX domains 2Aa.	0.682
LOC101164071	LOC101168616	ENSORLP00000007830	ENSORLP00000009403	Zgc:66447.	RAP1 GTPase activating protein.	0.681
LOC101164071	LOC101171386	ENSORLP00000007830	ENSORLP00000004309	Zgc:66447.	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.	0.691
LOC101164071	atp8a2	ENSORLP00000007830	ENSORLP00000041129	Zgc:66447.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.677
LOC101164071	clvs2	ENSORLP00000007830	ENSORLP00000042171	Zgc:66447.	Clavesin 2.	0.784
LOC101164071	mkln1	ENSORLP00000007830	ENSORLP00000015010	Zgc:66447.	Muskelin 1, intracellular mediator containing kelch motifs.	0.686
LOC101164071	mnd1	ENSORLP00000007830	ENSORLP00000027788	Zgc:66447.	Meiotic nuclear division protein 1 homolog; Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis. Belongs to the MND1 family.	0.841
LOC101164071	rnf6	ENSORLP00000007830	ENSORLP00000011167	Zgc:66447.	Ring finger protein (C3H2C3 type) 6.	0.712
LOC101164071	sec63	ENSORLP00000007830	ENSORLP00000028605	Zgc:66447.	SEC63 homolog, protein translocation regulator.	0.723
LOC101164071	xbp1	ENSORLP00000007830	ENSORLP00000027931	Zgc:66447.	X-box binding protein 1.	0.693
LOC101166531	LOC101164071	ENSORLP00000002898	ENSORLP00000007830	SH3 and PX domains 2Aa.	Zgc:66447.	0.682
LOC101166531	LOC101168616	ENSORLP00000002898	ENSORLP00000009403	SH3 and PX domains 2Aa.	RAP1 GTPase activating protein.	0.681
LOC101166531	LOC101171386	ENSORLP00000002898	ENSORLP00000004309	SH3 and PX domains 2Aa.	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.	0.718
LOC101166531	atp8a2	ENSORLP00000002898	ENSORLP00000041129	SH3 and PX domains 2Aa.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.661
LOC101166531	clvs2	ENSORLP00000002898	ENSORLP00000042171	SH3 and PX domains 2Aa.	Clavesin 2.	0.681
LOC101166531	mkln1	ENSORLP00000002898	ENSORLP00000015010	SH3 and PX domains 2Aa.	Muskelin 1, intracellular mediator containing kelch motifs.	0.570
LOC101166531	mnd1	ENSORLP00000002898	ENSORLP00000027788	SH3 and PX domains 2Aa.	Meiotic nuclear division protein 1 homolog; Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis. Belongs to the MND1 family.	0.638
LOC101166531	rnf6	ENSORLP00000002898	ENSORLP00000011167	SH3 and PX domains 2Aa.	Ring finger protein (C3H2C3 type) 6.	0.680
LOC101166531	sec63	ENSORLP00000002898	ENSORLP00000028605	SH3 and PX domains 2Aa.	SEC63 homolog, protein translocation regulator.	0.675
LOC101168616	LOC101164071	ENSORLP00000009403	ENSORLP00000007830	RAP1 GTPase activating protein.	Zgc:66447.	0.681