STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aptxAprataxin. (333 aa)    
Predicted Functional Partners:
xrcc1
X-ray repair complementing defective repair in Chinese hamster cells 1.
    
 
 0.853
LOC101166932
X-ray repair complementing defective repair in Chinese hamster cells 4.
    
 
 0.843
emsy
EMSY transcriptional repressor, BRCA2 interacting.
      
 0.830
tonsl
Tonsoku-like, DNA repair protein.
   
  
 0.810
tdp1
Tyrosyl-DNA phosphodiesterase 1.
    
 
 0.754
LOC101159022
Uncharacterized protein.
    
 
 0.734
lig4
DNA ligase.
   
 
 0.726
lig3
DNA ligase.
   
 
 0.703
ogg1
8-oxoguanine DNA glycosylase.
    
 
 0.676
ENSORLP00000041372
Uncharacterized protein.
      
 0.673
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.