psme1 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

psme1

Proteasome activator subunit 1. (250 aa)

Predicted Functional Partners:

psme2

0.999

psmb4

0.994

psma1

0.993

psmb3

0.993

psmb1

0.991

psma2

0.988

psmb2

0.987

psmb9

0.984

psmb9-like

0.984

psmd14

0.981

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
psma1	psma2	ENSORLP00000001498	ENSORLP00000007808	Proteasome endopeptidase complex.	Proteasome subunit alpha type.	0.999
psma1	psmb1	ENSORLP00000001498	ENSORLP00000013550	Proteasome endopeptidase complex.	Proteasome subunit beta.	0.999
psma1	psmb2	ENSORLP00000001498	ENSORLP00000012230	Proteasome endopeptidase complex.	Proteasome subunit beta.	0.999
psma1	psmb3	ENSORLP00000001498	ENSORLP00000035417	Proteasome endopeptidase complex.	Proteasome subunit beta 3.	0.999
psma1	psmb4	ENSORLP00000001498	ENSORLP00000001577	Proteasome endopeptidase complex.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.999
psma1	psmb9	ENSORLP00000001498	ENSORLP00000008342	Proteasome endopeptidase complex.	Proteasome subunit beta type-9; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. This subunit is involved in antigen processing to generate class I binding peptides (By similarity).	0.996
psma1	psmb9-like	ENSORLP00000001498	ENSORLP00000008363	Proteasome endopeptidase complex.	Proteasome subunit, beta type 9-like.	0.995
psma1	psmd14	ENSORLP00000001498	ENSORLP00000004836	Proteasome endopeptidase complex.	Proteasome 26S subunit, non-ATPase 14.	0.999
psma1	psme1	ENSORLP00000001498	ENSORLP00000007844	Proteasome endopeptidase complex.	Proteasome activator subunit 1.	0.993
psma1	psme2	ENSORLP00000001498	ENSORLP00000016814	Proteasome endopeptidase complex.	Proteasome activator subunit 2.	0.987
psma2	psma1	ENSORLP00000007808	ENSORLP00000001498	Proteasome subunit alpha type.	Proteasome endopeptidase complex.	0.999
psma2	psmb1	ENSORLP00000007808	ENSORLP00000013550	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
psma2	psmb2	ENSORLP00000007808	ENSORLP00000012230	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
psma2	psmb3	ENSORLP00000007808	ENSORLP00000035417	Proteasome subunit alpha type.	Proteasome subunit beta 3.	0.999
psma2	psmb4	ENSORLP00000007808	ENSORLP00000001577	Proteasome subunit alpha type.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.999
psma2	psmb9	ENSORLP00000007808	ENSORLP00000008342	Proteasome subunit alpha type.	Proteasome subunit beta type-9; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. This subunit is involved in antigen processing to generate class I binding peptides (By similarity).	0.997
psma2	psmb9-like	ENSORLP00000007808	ENSORLP00000008363	Proteasome subunit alpha type.	Proteasome subunit, beta type 9-like.	0.995
psma2	psmd14	ENSORLP00000007808	ENSORLP00000004836	Proteasome subunit alpha type.	Proteasome 26S subunit, non-ATPase 14.	0.999
psma2	psme1	ENSORLP00000007808	ENSORLP00000007844	Proteasome subunit alpha type.	Proteasome activator subunit 1.	0.988
psma2	psme2	ENSORLP00000007808	ENSORLP00000016814	Proteasome subunit alpha type.	Proteasome activator subunit 2.	0.988