Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC105354922FH2 domain-containing protein. (1002 aa)    
Predicted Functional Partners:
H2MV43_ORYLA
GBD/FH3 domain-containing protein.
 
  
 
 0.717
LOC101174346
Si:dkey-30c15.10.
  
 0.660
LOC101161232
Profilin; Belongs to the profilin family.
    
 0.628
LOC101166499
Profilin; Belongs to the profilin family.
    
 0.628
dvl3
Dishevelled segment polarity protein 3a.
    
 0.600
dvl2
Dishevelled segment polarity protein 2.
    
 0.600
dvl1
Dishevelled segment polarity protein 1a.
    
 0.600
anln
Anillin, actin binding protein.
   
 0.554
suox
Sulfite oxidase.
      
 0.535
LOC101155194
Uncharacterized protein.
    
 0.521
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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