Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101173635Selenoprotein M. (147 aa)    
Predicted Functional Partners:
selenof
Selenoprotein F.
   
  
 0.916
selenok
Selenoprotein K.
      
 0.906
selenon
Selenoprotein N.
      
 0.884
selenot
Selenoprotein T; Belongs to the SelWTH family. Selenoprotein T subfamily.
      
 0.872
selenoo
Selenoprotein O1.
      
 0.858
selenoi
Selenoprotein I; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
      
 0.767
nenf
Neudesin neurotrophic factor; Belongs to the cytochrome b5 family.
   
   0.748
txnrd2
Thioredoxin reductase 2, tandem duplicate 1.
      
 0.737
ENSORLP00000039854
Uncharacterized protein.
      
 0.702
LOC101169850
Thioredoxin reductase 3.
      
 0.693
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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