Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d31TBC1 domain family, member 31. (1067 aa)    
Predicted Functional Partners:
ckap5
Cytoskeleton associated protein 5.
    
 0.835
nol10
Nucleolar protein 10.
      
 0.802
cep135
Centrosomal protein 135.
   
 0.800
dctn2
Dynactin 2 (p50).
   
 0.798
fbxw2
F-box and WD repeat domain containing 2.
    
 0.792
c6h12orf4
Zgc:154077.
    
 
 0.783
rab5if
RAB5 interacting factor.
   
  
 0.761
cenpj
Centromere protein J.
   
  0.761
eps15
Epidermal growth factor receptor pathway substrate 15.
   
  0.757
LOC101167240
Uncharacterized protein.
   
  0.757
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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