Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nol7Nucleolar protein 7. (242 aa)    
Predicted Functional Partners:
utp4
UTP4 small subunit processome component.
    
 
 0.975
wdr43
WD repeat domain 43.
    
 
 0.951
NOL11
Nucleolar protein 11.
    
 
 0.948
wdr75
WD repeat domain 75.
    
   0.932
utp15
UTP15 small subunit processome component.
    
 
 0.931
fcf1
FCF1 rRNA-processing protein.
   
 
 0.855
rfwd3
Ring finger and WD repeat domain 3.
      
 0.845
pex5l
Peroxisomal biogenesis factor 5-like a.
      
 0.824
utp20
UTP20 small subunit processome component.
    
 
 0.809
utp3
UTP3 small subunit processome component.
   
 
 0.801
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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