STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nol7Nucleolar protein 7. (242 aa)    
Predicted Functional Partners:
utp4
UTP4 small subunit processome component.
    
   0.844
wdr43
WD repeat domain 43.
    
   0.834
wdr75
WD repeat domain 75.
    
   0.832
utp15
UTP15 small subunit processome component.
    
   0.831
NOL11
Nucleolar protein 11.
    
   0.831
rfwd3
Ring finger and WD repeat domain 3.
      
 0.782
nop9
Uncharacterized protein.
      
 0.767
fcf1
FCF1 rRNA-processing protein.
   
 
 0.739
LOC101159188
Carboxypeptidase A4.
      
 0.721
pex5l
Peroxisomal biogenesis factor 5-like a.
      
 0.721
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.