STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TBX6T-box transcription factor 6. (242 aa)    
Predicted Functional Partners:
LOC101164270
Mesogenin 1.
   
 0.718
meox1
Mesenchyme homeobox 1.
    
 
 0.672
LOC101172782
Ripply transcriptional repressor 2.
   
  
 0.671
fgf8
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.629
wnt3a
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
    
 0.612
hes7
BHLH domain-containing protein.
      
 0.593
zranb1
Zinc finger, RAN-binding domain containing 1a.
      
 0.563
sfrp5
Secreted frizzled-related protein 5.
      
 0.560
LOC100144359
TGF_BETA_2 domain-containing protein.
     
 0.541
col9a1
Collagen, type IX, alpha 1b.
      
 0.539
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.