Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TBX6T-box transcription factor 6. (242 aa)    
Predicted Functional Partners:
LOC101164270
Mesogenin 1.
   
 0.865
hes7
BHLH domain-containing protein.
    
 0.813
LOC101172782
Ripply transcriptional repressor 2.
   
 
 0.780
wnt3a
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
    
 0.746
meox1
Mesenchyme homeobox 1.
    
 
 0.697
LOC101174688
Junctional adhesion molecule 3b.
      
 0.658
fgf8
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.611
sfrp5
Secreted frizzled-related protein 5.
   
  
 0.604
LOC100049436
Her7.
   
 
 0.561
mesp
Mesoderm posterior aa.
   
 0.538
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.