Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC101168770SMU1 DNA replication regulator and spliceosomal factor b. (508 aa)    
Predicted Functional Partners:
mfap1
Microfibril associated protein 1.
   
 0.948
Ik
RED_N domain-containing protein.
   
 0.929
ENSORLP00000043615
RED_C domain-containing protein.
   
 0.929
zmat2
Zinc finger, matrin-type 2.
    
 0.890
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 0.831
wbp4
Uncharacterized protein.
    
 0.821
txnl4a
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
 0.803
wbp11
WW domain binding protein 11.
    
 0.797
UBL5
Ubiquitin like 5.
    
 0.789
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
   
  0.783
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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