STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2LPC0_ORYLAUncharacterized protein. (126 aa)    
Predicted Functional Partners:
igf2r
Insulin-like growth factor 2 receptor.
   
 0.634
rhobtb3
Si:dkey-6b12.5.
   
 0.617
Vamp3
Vesicle-associated membrane protein 3 (cellubrevin).
   
  0.607
m6pr
Mannose-6-phosphate receptor (cation dependent).
   
 0.581
LOC101170702
AB hydrolase-1 domain-containing protein.
   
 0.571
LOC101165076
AB hydrolase-1 domain-containing protein.
   
 0.571
abhd4
Abhydrolase domain containing 4.
   
 0.571
rabepk
Rab9 effector protein with kelch motifs.
    
  0.509
LOC105358653
Zmp:0000001301.
    
  0.509
ap2m1
AP-2 complex subunit mu; Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold but i [...]
    
  0.466
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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