Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101174762Uncharacterized protein; Belongs to the peptidase C14A family. (388 aa)    
Predicted Functional Partners:
LOC101169209
Uncharacterized protein.
   
 0.998
LOC101161579
Uncharacterized protein.
   
 0.989
LOC101170619
Uncharacterized protein.
   
 0.989
ENSORLP00000030118
CARD domain-containing protein.
   
 0.989
H2M2N2_ORYLA
Uncharacterized protein.
   
 0.974
casp8
Uncharacterized protein; Belongs to the peptidase C14A family.
   
0.974
LOC100125536
Uncharacterized protein; Belongs to the peptidase C14A family.
   
0.953
ENSORLP00000045232
Uncharacterized protein.
   
 0.903
H2L4N6_ORYLA
Uncharacterized protein.
   
 0.799
myd88
Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.
   
 0.781
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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