STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101174762Uncharacterized protein; Belongs to the peptidase C14A family. (388 aa)    
Predicted Functional Partners:
LOC101161579
Uncharacterized protein.
   
 0.979
LOC101170619
Uncharacterized protein.
   
 0.979
ENSORLP00000030118
CARD domain-containing protein.
   
 0.979
casp8
Uncharacterized protein; Belongs to the peptidase C14A family.
   
0.962
LOC100125536
Uncharacterized protein; Belongs to the peptidase C14A family.
   
0.952
LOC101169209
Uncharacterized protein.
   
 0.913
ENSORLP00000045232
Uncharacterized protein.
   
 0.799
apaf1
Apoptotic protease-activating factor 1; Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase-9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP.
    
 0.785
birc6
Baculoviral IAP repeat containing 6.
   
 0.760
Birc6
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.760
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.