Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
usp39Ubiquitin specific peptidase 39. (488 aa)    
Predicted Functional Partners:
prpf8
Pre-mRNA processing factor 8.
   
 0.984
eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 0.972
snrnp40
Small nuclear ribonucleoprotein 40 (U5).
   
 0.962
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
    
 0.947
cd2bp2
CD2 (cytoplasmic tail) binding protein 2.
    
   0.938
ddx23
DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.
   
 0.934
lsm4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.923
snrnp27
Small nuclear ribonucleoprotein 27 (U4/U6.U5).
   
 0.923
prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast).
   
 0.915
snrpd2
Small nuclear ribonucleoprotein Sm D2.
    
 0.914
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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