Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ccdc86Uncharacterized protein. (273 aa)    
Predicted Functional Partners:
mrto4
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
   
 
 0.977
nsa2
NSA2 ribosome biogenesis homolog (S. cerevisiae).
   
   0.926
nip7
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.
   
    0.830
gnl3
Guanine nucleotide binding protein-like 3 (nucleolar).
   
 
 0.805
LOC101166045
Guanine nucleotide binding protein-like 3 (nucleolar)-like.
   
 
 0.796
rpf2
Ribosome production factor 2 homolog.
   
 
 0.786
llph
LLP homolog, long-term synaptic facilitation factor.
   
   0.740
znf593
Zinc finger protein 593.
   
   0.729
rsl1d1
Ribosomal L1 domain containing 1.
   
   0.716
rsl24d1
Ribosomal L24 domain containing 1.
   
   0.710
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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