Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mmp9Uncharacterized protein. (690 aa)    
Predicted Functional Partners:
Kitlg
Kit ligand a.
     
 0.979
timp-2b
Tissue inhibitor of metalloproteinase-2b.
   
 0.912
timp2
Tissue inhibitor of metalloproteinase-2a.
   
 0.905
LOC101157631
Transforming growth factor beta; Belongs to the TGF-beta family.
    
 0.894
LOC101159348
Link domain-containing protein.
    
 0.890
timp3
NTR domain-containing protein.
   
 0.871
LOC101169209
Uncharacterized protein.
   
  
 0.810
il10
Interleukin 10.
     
 0.792
ENSORLP00000032968
Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.
    
 
 0.791
LOC101160956
JunE proto-oncogene, AP-1 transcription factor subunit.
    
 
 0.776
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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