STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101160348Membrane-associated ring finger (C3HC4) 11. (317 aa)    
Predicted Functional Partners:
raver2
Ribonucleoprotein, PTB-binding 2.
      
 0.716
cfap52
Cilia and flagella associated protein 52.
      
 0.618
LOC100049333
Zona pellucida glycoprotein 3f, tandem duplicate 1.
      
 0.618
ube2g2
Ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.582
marchf7
Membrane-associated ring finger (C3HC4) 7.
      
 0.535
spata18
Spermatogenesis associated 18.
      
 0.508
nup214
Nup214_FG domain-containing protein.
   
  
 0.506
efcab2
Uncharacterized protein.
      
 0.504
LOC101160153
Membrane-associated ring finger (C3HC4) 2.
      
 0.504
morn3
Uncharacterized protein.
      
 0.503
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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