STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arl13bADP-ribosylation factor-like 13b. (398 aa)    
Predicted Functional Partners:
ift88
Intraflagellar transport 88 homolog.
    
 0.892
inpp5e
Inositol polyphosphate-5-phosphatase E.
     
 0.840
pde6d
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta; Promotes the release of prenylated target proteins from cellular membranes. Modulates the activity of prenylated or palmitoylated Ras family members by regulating their subcellular location. Required for normal ciliary targeting of farnesylated target proteins, such as INPP5E. Modulates the subcellular location of target proteins by acting as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude. Stabilizes ARL3-GTP by decreasing the nucleotide [...]
     
 0.840
cog8
Component of oligomeric golgi complex 8.
   
 0.772
ift22
Intraflagellar transport 22 homolog (Chlamydomonas).
    
 
 0.754
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.717
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.711
ift81
Intraflagellar transport 81 homolog.
    
 
 0.704
LOC101170769
Centrin, EF-hand protein, 2.
    
 0.681
ift74
Intraflagellar transport 74.
    
 0.671
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.