STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arl13bADP-ribosylation factor-like 13b. (398 aa)    
Predicted Functional Partners:
ift22
Intraflagellar transport 22 homolog (Chlamydomonas).
    
 
 0.987
inpp5e
Inositol polyphosphate-5-phosphatase E.
     
 0.983
ift81
Intraflagellar transport 81 homolog.
    
 
 0.983
ift74
Intraflagellar transport 74.
    
 0.979
ift52
Intraflagellar transport 52 homolog (Chlamydomonas).
    
 
 0.973
ift27
Intraflagellar transport 27.
    
 
 0.966
pde6d
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta; Promotes the release of prenylated target proteins from cellular membranes. Modulates the activity of prenylated or palmitoylated Ras family members by regulating their subcellular location. Required for normal ciliary targeting of farnesylated target proteins, such as INPP5E. Modulates the subcellular location of target proteins by acting as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude. Stabilizes ARL3-GTP by decreasing the nucleotide [...]
     
 0.965
ift88
Intraflagellar transport 88 homolog.
    
 0.965
LOC101154808
Uncharacterized protein.
    
 
 0.913
ift46
Intraflagellar transport 46 homolog (Chlamydomonas).
    
 
 0.913
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.