Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC101170769Centrin, EF-hand protein, 2. (175 aa)    
Predicted Functional Partners:
xpc
Xeroderma pigmentosum, complementation group C.
    
 0.996
poc5
POC5 centriolar protein homolog (Chlamydomonas).
    
 
 0.972
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
   
 0.919
ercc3
Excision repair cross-complementation group 3.
    
 0.916
rad23a
RAD23 homolog A, nucleotide excision repair protein a.
   
 0.916
LOC101167715
General transcription factor IIH subunit.
    
 0.916
ddb2
Damage-specific DNA binding protein 2.
   
 0.909
xpa
Xeroderma pigmentosum, complementation group A.
    
 0.906
cep164
WW domain-containing protein.
    
 0.904
ccnh
Cyclin H; Belongs to the cyclin family.
   
 0.901
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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