STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101170769Centrin, EF-hand protein, 2. (175 aa)    
Predicted Functional Partners:
xpc
Xeroderma pigmentosum, complementation group C.
    
 0.972
LOC101173720
Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]
   
 
 0.915
pcid2
PCI domain containing 2.
    
 
 0.858
mcm3ap
Minichromosome maintenance complex component 3 associated protein.
    
 
 0.831
LOC101170553
NME/NM23 family member 8; Belongs to the NDK family.
   
 
 0.827
ift88
Intraflagellar transport 88 homolog.
    
 0.790
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
   
 0.786
rad23a
RAD23 homolog A, nucleotide excision repair protein a.
   
 0.786
ddb2
Damage-specific DNA binding protein 2.
   
 0.784
sac3d1
Si:zfos-452g4.1.
    
 
 0.780
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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