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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dnajc30DnaJ (Hsp40) homolog, subfamily C, member 30b. (195 aa)    
Predicted Functional Partners:
wdr53
WD repeat domain 53.
   
  
 0.614
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
 
 0.601
Cux1
Homeobox protein cut-like.
      
 0.573
dnajc11
DnaJ (Hsp40) homolog, subfamily C, member 11a.
    
 
 0.563
LOC101169506
Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.
      
 0.551
dnajc21
DnaJ heat shock protein family (Hsp40) member C21.
   
  
 0.544
dnajc14
DnaJ (Hsp40) homolog, subfamily C, member 14.
      
 0.535
ppp5c
Serine/threonine-protein phosphatase.
      
 0.534
dnajc15
DnaJ (Hsp40) homolog, subfamily C, member 15.
      
 0.533
gtf2ird1
GTF2I repeat domain containing 1.
      
 0.531
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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