Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
LOC101170009FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived). (1021 aa)    
Predicted Functional Partners:
nrp1
Neuropilin; Belongs to the neuropilin family.
     
 0.596
rhof
Ras homolog family member F.
     
 0.559
H2M6E4_ORYLA
Uncharacterized protein.
     
 0.553
LOC101165932
Intersectin 2a.
     
 0.553
ENSORLP00000034742
Uncharacterized protein.
     
 0.553
ENSORLP00000036645
EH domain-containing protein.
     
 0.553
ENSORLP00000041578
SH3 domain-containing protein.
     
 0.553
Vamp3
Vesicle-associated membrane protein 3 (cellubrevin).
     
 0.491
LOC101160145
Family with sequence similarity 169 member B.
    
  0.449
baiap2l2
BAI1-associated protein 2-like 2b.
     
  0.445
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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