STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plekPleckstrin. (350 aa)    
Predicted Functional Partners:
rabif
RAB interacting factor.
      
 0.584
carmil1
Uncharacterized protein.
      
 0.569
ptn
Pleiotrophin.
      
 0.558
tyrobp
Uncharacterized protein.
   
  
 0.462
fermt3
Fermitin family member 3b.
   
  
 0.456
tln2
Talin 2b.
     
 0.440
LOC101173776
Talin 2a.
     
 0.440
tln1
Talin 1.
     
 0.440
LOC101166041
Kinesin family member 1Aa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.440
rasa1
RAS p21 protein activator (GTPase activating protein) 1a.
   
  
 0.415
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.