Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lhfpl5LHFPL tetraspan subfamily member 5b. (286 aa)    
Predicted Functional Partners:
TMC1
Transmembrane channel-like protein.
   
 0.699
tmie
Transmembrane inner ear.
     
 0.656
LOC101167136
Transmembrane channel-like protein.
   
 0.628
LOC101164350
Protocadherin-related 15b.
    
 0.603
pcdh15
Protocadherin-related 15a.
    
 0.603
cdhr5
Uncharacterized protein.
    
 0.584
LOC101172638
Uncharacterized protein.
    
 0.584
LOC101158452
Transmembrane channel-like protein.
     
 0.549
Cdh23
Uncharacterized protein.
    
 0.542
LOC101166471
Calcium and integrin binding family member 2.
     
 0.520
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.