close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lhfpl5LHFPL tetraspan subfamily member 5b. (286 aa)    
Predicted Functional Partners:
TMC1
Transmembrane channel-like protein.
   
 
 0.560
tmie
Transmembrane inner ear.
     
 0.543
LOC101164350
Protocadherin-related 15b.
   
 0.513
cdhr5
Uncharacterized protein.
   
 0.513
pcdh15
Protocadherin-related 15a.
   
 0.513
LOC101172638
Uncharacterized protein.
   
 0.513
LOC101167136
Transmembrane channel-like protein.
   
 
 0.486
LOC101166471
Calcium and integrin binding family member 2.
   
 
 0.408
cib3
Calcium and integrin binding family member 3.
   
 
 0.408
CIB2
Calcium and integrin binding family member 2.
   
 
 0.408
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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