Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tm9sf1Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (594 aa)    
Predicted Functional Partners:
chmp2a
Charged multivesicular body protein 2A.
   
 0.911
chmp3
Charged multivesicular body protein 3.
   
 0.898
snf8
Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.
    
 0.891
ist1
IST1 factor associated with ESCRT-III.
   
 0.888
vps36
Vacuolar protein sorting 36 homolog.
    
 0.875
vps25
Vacuolar protein sorting 25 homolog.
    
 0.875
chmp2b
Charged multivesicular body protein 2Bb.
   
 0.864
vta1
Vesicle (multivesicular body) trafficking 1.
   
 0.849
chmp7
Charged multivesicular body protein 7.
    
 0.841
LOC101164680
Charged multivesicular body protein 5a.
   
 0.810
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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