Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
H2LPN9_ORYLATUB like protein 1b; Belongs to the TUB family. (309 aa)    
Predicted Functional Partners:
ift140
Intraflagellar transport 140 homolog (Chlamydomonas).
    
 0.886
ttc21b
Tetratricopeptide repeat domain 21B.
    
 0.862
IFT122
Intraflagellar transport 122.
    
 0.855
wdr19
WD repeat domain 19.
    
 0.846
wdr35
WD repeat-containing protein 35.
    
 0.815
IFT43
Uncharacterized protein.
    
 
 0.693
gpr161
G protein-coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.
    
 0.624
ankrd54
Ankyrin repeat domain 54.
    
   0.622
mpl
MPL proto-oncogene, thrombopoietin receptor.
      
 0.610
cdc73
Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).
    
   0.610
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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