STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2LPN9_ORYLATUB like protein 1b; Belongs to the TUB family. (309 aa)    
Predicted Functional Partners:
ttc21b
Tetratricopeptide repeat domain 21B.
    
 0.717
ift140
Intraflagellar transport 140 homolog (Chlamydomonas).
    
 0.710
IFT122
Intraflagellar transport 122.
    
 0.708
wdr19
WD repeat domain 19.
    
 0.703
wdr35
WD repeat-containing protein 35.
    
 0.674
gpr161
G protein-coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.
     
 0.607
rd3
Retinal degeneration 3, GUCY2D regulator.
      
 0.481
H2LG67_ORYLA
Uncharacterized protein.
   
  
 0.460
LOC101174207
Aryl hydrocarbon receptor interacting protein-like 1.
      
 0.443
H2MW65_ORYLA
Protein kinase, cAMP-dependent, regulatory, type II, alpha, B.
   
  0.442
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.