Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
H2LPQ9_ORYLACut-like homeobox 1b. (658 aa)    
Predicted Functional Partners:
Cux1
Homeobox protein cut-like.
 
      0.899
znf451
Zinc finger protein 451.
    
 
 0.600
LOC101160102
Family with sequence similarity 110 member B.
      
 0.543
gosr1
Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.
    
 0.534
H2LJ06_ORYLA
Uncharacterized protein.
    
 
 0.523
satb1
SATB homeobox 1b.
    
 
 0.523
LOC101157555
Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.
    
 0.509
LOC101171177
Eomesodermin homolog a.
    
 
 0.466
tbr1
T-box brain transcription factor 1b.
    
 
 0.466
golga5
Golgin A5.
   
 
 0.459
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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