STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
capgCapping protein (actin filament), gelsolin-like b. (344 aa)    
Predicted Functional Partners:
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
   
 
 0.719
cog8
Component of oligomeric golgi complex 8.
    
 
 0.713
cog3
Component of oligomeric golgi complex 3.
    
 
 0.712
tmod3
Tropomodulin 2.
    
 
 0.708
was
WASP actin nucleation promoting factor a.
    
 
 0.692
wasl
Uncharacterized protein.
    
 
 0.692
rbm18
RNA binding motif protein 18.
    
   0.657
LOC101170922
Lymphocyte specific protein 1.
   
   0.628
LOC101155491
F-box protein 30a.
    
   0.613
tmod4
Tropomodulin 4 (muscle).
    
 
 0.587
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.