STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101175092C-type lectin domain-containing protein. (277 aa)    
Predicted Functional Partners:
ube4b
Ubiquitination factor E4B, UFD2 homolog (S. cerevisiae).
      
 0.609
tnr
Tenascin R (restrictin, janusin).
   
  0.430
LOC101171095
Zmp:0000000846.
   
  0.430
LOC101170815
Tenascin C.
   
  0.430
H2LRH6_ORYLA
Uncharacterized protein.
    
  0.426
tnn
Tenascin N.
    
  0.426
LOC101155444
Uncharacterized protein.
    
  0.426
LOC101169809
Si:dkey-26c10.5.
    
 0.420
LOC105355978
C-type lectin domain-containing protein.
    
 0.420
ADAMTS5
ADAM metallopeptidase with thrombospondin type 1 motif 5.
    
 0.402
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.