Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101174455Zgc:171592; Belongs to the peptidase S1 family. (281 aa)    
Predicted Functional Partners:
LOC101173215
Metalloendopeptidase.
   
 
 0.706
mep1b
Meprin A subunit.
   
 
 0.706
SLC15A1
Solute carrier family 15 member 1b.
   
  
 0.617
LOC101170788
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
   
 0.610
tryp
Trypsinogen; Belongs to the peptidase S1 family.
   
 0.610
LOC101171987
Si:dkey-33m11.7; Belongs to the peptidase S1 family.
   
 0.610
LOC101154931
Serine protease 1; Belongs to the peptidase S1 family.
   
 0.610
LOC101160980
Zmp:0000001088; Belongs to the peptidase S1 family.
   
 0.610
LOC101161921
Trypsin-2.
   
 0.610
LOC101173293
Kininogen 1.
   
 0.608
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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