STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101174455Zgc:171592; Belongs to the peptidase S1 family. (281 aa)    
Predicted Functional Partners:
angpt1
Angiopoietin 1.
    
 0.691
LOC101175393
Macrophage stimulating 1 receptor a.
    
 0.587
met
MET proto-oncogene, receptor tyrosine kinase.
    
 0.587
mst1r
Macrophage stimulating 1 receptor b.
    
 0.587
mmp9
Uncharacterized protein.
   
 0.582
LOC101171463
Angiopoietin 4.
    
 0.579
tryp
Trypsinogen; Belongs to the peptidase S1 family.
  
0.546
LOC101171987
Si:dkey-33m11.7; Belongs to the peptidase S1 family.
  
0.546
LOC101161921
Trypsin-2.
  
0.546
LOC101170788
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
  
0.536
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: medium (68%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.