Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101169625Uncharacterized protein. (805 aa)    
Predicted Functional Partners:
eaf1
ELL associated factor 1.
    
 0.994
cdk9
Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.
    
 0.992
mllt1
MLLT1 super elongation complex subunit a.
    
 0.947
mllt3
MLLT3 super elongation complex subunit.
    
 0.947
aff4
AF4/FMR2 family, member 4.
    
 
 0.946
LOC101157196
Cyclin T2b; Belongs to the cyclin family.
   
 0.888
ccnt1
Cyclin T1; Belongs to the cyclin family.
   
 0.888
ccnt2
Cyclin T2; Belongs to the cyclin family.
   
 0.888
ell
Elongation factor RNA polymerase II.
    
 0.870
LOC101159914
Si:ch211-13k12.2.
    
 0.870
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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