Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PPEF2Serine/threonine-protein phosphatase with EF-hands. (717 aa)    
Predicted Functional Partners:
onecut2
One cut domain family member.
   
  
 0.805
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
    
 
 0.800
ccng2
Cyclin G2; Belongs to the cyclin family.
    
 0.795
NUP54
Nucleoporin 54.
      
 0.782
WDR7
WD repeat domain 7.
    
 
 0.765
LOC101159996
CYCLIN domain-containing protein; Belongs to the cyclin family.
    
 0.747
LOC101160166
Chromobox homolog 4 (Pc class homolog, Drosophila).
    
 
 0.650
cbx4
Chromobox 4.
    
 
 0.650
furin
Furin (paired basic amino acid cleaving enzyme) b; Belongs to the peptidase S8 family.
      
 0.588
chd1
Chromodomain helicase DNA binding protein 1.
    
 0.582
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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