Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101171158Tetraspanin. (219 aa)    
Predicted Functional Partners:
snx13
Sorting nexin 13.
    
   0.709
cd63
Tetraspanin.
    
 
 0.680
faap24
FA core complex associated protein 24.
    
   0.612
pllp
Plasmolipin.
   
  
 0.582
lgi3
Leucine-rich repeat LGI family, member 3.
   
 
 0.552
LOC101171500
Proteolipid protein 1a.
   
  
 0.552
ENSORLP00000028318
Ig-like domain-containing protein.
    
 
 0.540
ptgfrn
Uncharacterized protein.
    
 
 0.540
dclre1b
DNA cross-link repair 1B.
      
 0.536
LOC101157800
Proteolipid protein 1b.
   
  
 0.522
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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