Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Nlgn3Neuroligin 3a. (851 aa)    
Predicted Functional Partners:
nrxn1
Neurexin 1.
   
 0.916
LOC101156134
Neurexin 3b.
   
 0.878
LOC101169749
Uncharacterized protein.
   
 0.878
LOC101167491
Neurexin 1.
   
 0.877
LOC101166255
Uncharacterized protein.
   
 0.860
LOC101159214
Discs, large homolog 4a (Drosophila); Belongs to the MAGUK family.
    
 0.619
LOC101165088
Uncharacterized protein.
   
 0.616
ENSORLP00000035585
Neurexin 2b.
   
 0.616
wdr43
WD repeat domain 43.
   
 0.608
dlg3
Discs, large homolog 3 (Drosophila); Belongs to the MAGUK family.
    
 0.567
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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