STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162622Uncharacterized protein. (336 aa)    
Predicted Functional Partners:
fgf19
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.558
SLC10A1
Solute carrier family 10 member 1.
      
 0.483
nr0b2
Nuclear receptor subfamily 0, group B, member 2a.
   
  
 0.468
ubxn7
UBX domain protein 7.
      
 0.463
LOC101169065
Fatty acid binding protein 6, ileal (gastrotropin).
   
  
 0.454
nr1h4
Nuclear receptor subfamily 1, group H, member 4.
   
  
 0.442
LOC101160349
Cholesterol 7-alpha-monooxygenase; Belongs to the cytochrome P450 family.
   
  
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.