Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162622Uncharacterized protein. (336 aa)    
Predicted Functional Partners:
fgf19
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.715
SLC10A1
Solute carrier family 10 member 1.
      
 0.691
nr1h4
Nuclear receptor subfamily 1, group H, member 4.
   
  
 0.635
nr0b2
Nuclear receptor subfamily 0, group B, member 2a.
   
  
 0.622
LOC101169065
Fatty acid binding protein 6, ileal (gastrotropin).
   
  
 0.611
LOC101160349
Cholesterol 7-alpha-monooxygenase; Belongs to the cytochrome P450 family.
      
 0.603
ENSORLP00000036913
Uncharacterized protein.
      
 0.561
klhl15
Kelch-like family member 15.
      
 0.539
chst10
Carbohydrate sulfotransferase.
      
 0.523
slc10a3
Solute carrier family 10 member 3.
      
 0.491
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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