H2LQ06_ORYLA protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H2LQ06_ORYLA

Si:ch211-113j13.2. (446 aa)

Predicted Functional Partners:

LOC101165104

0.804

kcnj3

0.804

slc45a3

0.690

LOC111946430

0.545

LOC101168199

0.531

LOC101175500

0.531

gnb4

0.531

ol-gb1

0.531

gng3

0.515

LOC101155207-2

0.494

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2LQ06_ORYLA	LOC101155207-2	ENSORLP00000008142	ENSORLP00000039363	Si:ch211-113j13.2.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.494
H2LQ06_ORYLA	LOC101165104	ENSORLP00000008142	ENSORLP00000006656	Si:ch211-113j13.2.	Potassium voltage-gated channel, subfamily J, member 19b.	0.804
H2LQ06_ORYLA	LOC101168199	ENSORLP00000008142	ENSORLP00000004503	Si:ch211-113j13.2.	WD_REPEATS_REGION domain-containing protein.	0.531
H2LQ06_ORYLA	LOC101175500	ENSORLP00000008142	ENSORLP00000009914	Si:ch211-113j13.2.	Guanine nucleotide binding protein (G protein), beta polypeptide 2.	0.531
H2LQ06_ORYLA	LOC111946430	ENSORLP00000008142	ENSORLP00000030431	Si:ch211-113j13.2.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.545
H2LQ06_ORYLA	gnb4	ENSORLP00000008142	ENSORLP00000029397	Si:ch211-113j13.2.	Guanine nucleotide binding protein (G protein), beta polypeptide 4b.	0.531
H2LQ06_ORYLA	gng3	ENSORLP00000008142	ENSORLP00000035224	Si:ch211-113j13.2.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.515
H2LQ06_ORYLA	kcnj3	ENSORLP00000008142	ENSORLP00000020876	Si:ch211-113j13.2.	Potassium inwardly-rectifying channel, subfamily J, member 3a.	0.804
H2LQ06_ORYLA	ol-gb1	ENSORLP00000008142	ENSORLP00000038107	Si:ch211-113j13.2.	WD_REPEATS_REGION domain-containing protein.	0.531
H2LQ06_ORYLA	slc45a3	ENSORLP00000008142	ENSORLP00000019687	Si:ch211-113j13.2.	Zgc:77158.	0.690
LOC101155207-2	H2LQ06_ORYLA	ENSORLP00000039363	ENSORLP00000008142	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Si:ch211-113j13.2.	0.494
LOC101155207-2	LOC101165104	ENSORLP00000039363	ENSORLP00000006656	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Potassium voltage-gated channel, subfamily J, member 19b.	0.570
LOC101155207-2	LOC101168199	ENSORLP00000039363	ENSORLP00000004503	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	WD_REPEATS_REGION domain-containing protein.	0.987
LOC101155207-2	LOC101175500	ENSORLP00000039363	ENSORLP00000009914	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide binding protein (G protein), beta polypeptide 2.	0.989
LOC101155207-2	LOC111946430	ENSORLP00000039363	ENSORLP00000030431	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.964
LOC101155207-2	gnb4	ENSORLP00000039363	ENSORLP00000029397	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide binding protein (G protein), beta polypeptide 4b.	0.981
LOC101155207-2	gng3	ENSORLP00000039363	ENSORLP00000035224	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.963
LOC101155207-2	kcnj3	ENSORLP00000039363	ENSORLP00000020876	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Potassium inwardly-rectifying channel, subfamily J, member 3a.	0.570
LOC101155207-2	ol-gb1	ENSORLP00000039363	ENSORLP00000038107	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	WD_REPEATS_REGION domain-containing protein.	0.981
LOC101165104	H2LQ06_ORYLA	ENSORLP00000006656	ENSORLP00000008142	Potassium voltage-gated channel, subfamily J, member 19b.	Si:ch211-113j13.2.	0.804