STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101174837Ankyrin 1, erythrocytic a. (1751 aa)    
Predicted Functional Partners:
pld6
Phospholipase D family, member 6.
    
 0.527
mov10l1
Uncharacterized protein.
    
 0.523
LOC101175117
Spectrin beta chain; Belongs to the spectrin family.
   
 0.522
tdrkh
Tudor and KH domain containing.
    
 
 0.498
LOC101158057
Canopy FGF signaling regulator 3.
      
 0.497
LOC101164215
Uncharacterized protein.
    
 0.484
l1cam
L1 cell adhesion molecule, paralog a.
    
 0.484
LOC101160163
Uncharacterized protein.
    
 0.484
LOC101171409
Uncharacterized protein.
    
 0.484
nfasc
Neurofascin homolog (chicken) a.
    
 0.484
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.