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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101158947Bromodomain containing 4. (1504 aa)    
Predicted Functional Partners:
taf7l
TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 
 0.666
crbn
Cereblon.
    
 
 0.653
cdk9
Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.
   
 
 0.613
e2f1
E2F transcription factor 1.
    
 
 0.603
dmap1
DNA methyltransferase 1 associated protein 1.
    
 
 0.581
nsd3
Nuclear receptor binding SET domain protein 3.
   
 
 0.570
jmjd6
Jumonji domain containing 6, arginine demethylase and lysine hydroxylase.
    
 
 0.546
med12
Mediator complex subunit 12.
    
 
 0.543
LOC101156841
Transcription initiation factor TFIID subunit.
    
 
0.521
LOC101168870
E1A binding protein p300 b.
   
0.489
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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