STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lxnLatexin. (272 aa)    
Predicted Functional Partners:
tm7sf3
Transmembrane 7 superfamily member 3.
      
 0.848
crim1
Uncharacterized protein.
      
 0.717
mycbpap
Uncharacterized protein.
      
 0.695
H2MPI8_ORYLA
Peptidase_M14 domain-containing protein.
    
 
 0.635
LOC101155699
Protein S100; Belongs to the S-100 family.
      
 0.611
LOC101165159
Netrin G2.
      
 0.586
ENSORLP00000026279
Laminin N-terminal domain-containing protein.
      
 0.586
gfm1
Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Does not mediate the disassembly of ribosomes from messenger RNA at the termination of mito [...]
      
 0.535
mlf1
Myeloid leukemia factor 1.
      
 0.535
nudt9
Nudix (nucleoside diphosphate linked moiety X)-type motif 9.
      
 0.535
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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