STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oc90PA2c domain-containing protein. (67 aa)    
Predicted Functional Partners:
fpgt
Fucose-1-phosphate guanylyltransferase.
      
 0.822
lasp1
LIM and SH3 protein 1.
      
 0.821
LOC101168957
Protein phosphatase 1, regulatory (inhibitor) subunit 1B.
      
 0.818
pla2g4a
Phospholipase A2.
     
 0.649
ENSORLP00000035396
Uncharacterized protein.
      
 0.644
OTOP1
Otopetrin 1.
      
 0.633
dock5
Dedicator of cytokinesis 5; Belongs to the DOCK family.
      
 0.602
LOC101158493
Otolith matrix protein.
   
  
 0.562
otol1
Otolin 1b.
      
 0.491
tecta
Tectorin alpha.
      
 0.416
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.