Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Oc90PA2c domain-containing protein. (67 aa)    
Predicted Functional Partners:
ENSORLP00000035396
Uncharacterized protein.
      
 0.886
LOC101158493
Otolith matrix protein.
   
  
 0.853
OTOP1
Otopetrin 1.
      
 0.848
fpgt
Fucose-1-phosphate guanylyltransferase.
      
 0.832
LOC101168957
Protein phosphatase 1, regulatory (inhibitor) subunit 1B.
      
 0.816
lasp1
LIM and SH3 protein 1.
      
 0.813
pla2g4a
Phospholipase A2.
     
 0.726
dnaaf4
Dynein axonemal assembly factor 4.
      
 0.644
dock5
Dedicator of cytokinesis 5; Belongs to the DOCK family.
      
 0.616
otol1
Otolin 1b.
      
 0.611
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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