c13h19orf54 protein (Oryzias latipes) - STRING interaction network

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[Homology]

Score

c13h19orf54

Zgc:153119. (305 aa)

Predicted Functional Partners:

lsm5

0.981

lsm2

0.979

lsm6

0.976

lsm7

0.968

lsm8

0.967

snrpd2

0.963

lsm4

0.962

snrpg

0.947

snrpe

0.945

snrpd1

0.934

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
c13h19orf54	lsm2	ENSORLP00000008169	ENSORLP00000041242	Zgc:153119.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.979
c13h19orf54	lsm4	ENSORLP00000008169	ENSORLP00000010535	Zgc:153119.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.962
c13h19orf54	lsm5	ENSORLP00000008169	ENSORLP00000031894	Zgc:153119.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.981
c13h19orf54	lsm6	ENSORLP00000008169	ENSORLP00000038911	Zgc:153119.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.976
c13h19orf54	lsm7	ENSORLP00000008169	ENSORLP00000043390	Zgc:153119.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.968
c13h19orf54	lsm8	ENSORLP00000008169	ENSORLP00000021798	Zgc:153119.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.967
c13h19orf54	snrpd1	ENSORLP00000008169	ENSORLP00000015671	Zgc:153119.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.934
c13h19orf54	snrpd2	ENSORLP00000008169	ENSORLP00000043777	Zgc:153119.	Small nuclear ribonucleoprotein Sm D2.	0.963
c13h19orf54	snrpe	ENSORLP00000008169	ENSORLP00000029192	Zgc:153119.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.945
c13h19orf54	snrpg	ENSORLP00000008169	ENSORLP00000030086	Zgc:153119.	Small nuclear ribonucleoprotein G.	0.947
lsm2	c13h19orf54	ENSORLP00000041242	ENSORLP00000008169	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Zgc:153119.	0.979
lsm2	lsm4	ENSORLP00000041242	ENSORLP00000010535	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
lsm2	lsm5	ENSORLP00000041242	ENSORLP00000031894	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
lsm2	lsm6	ENSORLP00000041242	ENSORLP00000038911	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
lsm2	lsm7	ENSORLP00000041242	ENSORLP00000043390	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
lsm2	lsm8	ENSORLP00000041242	ENSORLP00000021798	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
lsm2	snrpd1	ENSORLP00000041242	ENSORLP00000015671	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.985
lsm2	snrpd2	ENSORLP00000041242	ENSORLP00000043777	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D2.	0.999
lsm2	snrpe	ENSORLP00000041242	ENSORLP00000029192	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
lsm2	snrpg	ENSORLP00000041242	ENSORLP00000030086	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein G.	0.972