Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sycp1Uncharacterized protein. (904 aa)    
Predicted Functional Partners:
spag8
Sperm associated antigen 8.
    
 
 0.701
LOC101158273
Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.690
mau2
MAU2 sister chromatid cohesion factor.
      
 0.582
dmc1
Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.
    
 
 0.565
armc3
Armadillo repeat containing 3.
    
 
 0.561
exd1
3'-5' exonuclease domain-containing protein.
      
 0.544
LOC101170553
NME/NM23 family member 8; Belongs to the NDK family.
   
 0.536
spo11
SPO11 initiator of meiotic double stranded breaks.
    
 
 0.525
spata17
Spermatogenesis associated 17.
    
 0.508
akr1a1
Aldo-keto reductase family 1, member A1b (aldehyde reductase).
    
 
 0.505
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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